5UFB
Crystal Structure of Variable Lymphocyte Receptor (VLR) Tn4-22 (Apo)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-04-16 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.03320 |
Spacegroup name | I 41 |
Unit cell lengths | 83.688, 83.688, 115.073 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.844 - 1.844 |
R-factor | 0.2068 |
Rwork | 0.206 |
R-free | 0.21310 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3e6j |
RMSD bond length | 0.007 |
RMSD bond angle | 1.024 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 41.844 | 1.910 |
High resolution limit [Å] | 1.844 | 1.844 |
Rpim | 0.030 | 0.410 |
Number of reflections | 33959 | |
<I/σ(I)> | 15.1 | |
Completeness [%] | 100.0 | |
Redundancy | 6.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 21.6 mg/mL Tn4-22, 100 mM sodium acetate, pH 4.6, 200 mM lithium sulfate, 2.7 M sodium chloride |