5UDS
LarE, a sulfur transferase involved in synthesis of the cofactor for lactate racemase, in complex with MgATP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-06-12 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.9787 |
Spacegroup name | P 41 2 2 |
Unit cell lengths | 107.724, 107.724, 318.054 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.630 - 2.370 |
R-factor | 0.195 |
Rwork | 0.191 |
R-free | 0.25700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5udq |
RMSD bond length | 0.007 |
RMSD bond angle | 0.976 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.27) |
Phasing software | PHASER (2.6.0) |
Refinement software | PHENIX (1.11.1-2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.020 | 2.420 |
High resolution limit [Å] | 2.367 | 2.370 |
Rmerge | 0.113 | 0.965 |
Number of reflections | 77278 | |
<I/σ(I)> | 19.1 | |
Completeness [%] | 99.8 | 97.7 |
Redundancy | 9.9 | 8.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 294.15 | 4 ul ~39 mg/ml LarE (100 mM Tris-HCl pH 7.5, 300 mM NaCl) mixed with 4 ul reservoir solution. Hanging drop reservoir contained 100 ul of 27.5% v/v pentaerythritol ethoxylate (15/4 EO/OH), 50 mM BIS-TRIS pH 6.5, 105 mM ammonium sulfate). Crystal soaked 3 minutes in 30.0% v/v pentaerythritol ethoxylate (15/4 EO/OH), 50 mM BIS-TRIS pH 6.5, 50 mM ammonium sulfate, 18.5 mM adenosine triphosphate, 40 mM magnesium chloride. |