5UDF
Structure of the N-terminal domain of lipoprotein-releasing system transmembrane protein LolE from Acinetobacter baumannii
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-08-21 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97872 |
Spacegroup name | H 3 |
Unit cell lengths | 156.370, 156.370, 91.160 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.000 - 2.350 |
R-factor | 0.179 |
Rwork | 0.176 |
R-free | 0.21850 |
Structure solution method | SAD |
RMSD bond length | 0.006 |
RMSD bond angle | 0.820 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (dev_2621) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.140 | 50.000 | 2.410 |
High resolution limit [Å] | 2.350 | 10.510 | 2.350 |
Rmerge | 0.059 | 0.033 | 0.499 |
Number of reflections | 34401 | ||
<I/σ(I)> | 14.24 | 30.9 | 2.29 |
Completeness [%] | 99.3 | 98.2 | 94.7 |
Redundancy | 3.733 | 3.528 | 3.023 |
CC(1/2) | 0.998 | 0.998 | 0.704 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 290 | Native data set: Microlytic MCSG1 screen H6: 3.5M Sodium formate, 100mM Sodium Acetate / HCl pH 4.6: AcbaC.18885.a.B2.PS02462 at 14.5mg/ml, cryo: 20% EG, tray 265717h6, puck xck3-10. SeMet data set: Microlytic MCSG1 screen H6 optimization: 3M Sodium formate, 100mM Sodium Acetate / HCl pH 4.43: AcbaC.18885.a.B2.PS38034 at 18.0mg/ml, cryo: well D12: 4M Sodium formate, 100mM Sodium Acetate/HCl pH 4.43: tray 265717h6, puck xck3-10 |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 290 | Native data set: Microlytic MCSG1 screen H6: 3.5M Sodium formate, 100mM Sodium Acetate / HCl pH 4.6: AcbaC.18885.a.B2.PS02462 at 14.5mg/ml, cryo: 20% EG, tray 265717h6, puck xck3-10. SeMet data set: Microlytic MCSG1 screen H6 optimization: 3M Sodium formate, 100mM Sodium Acetate / HCl pH 4.43: AcbaC.18885.a.B2.PS38034 at 18.0mg/ml, cryo: well D12: 4M Sodium formate, 100mM Sodium Acetate/HCl pH 4.43: tray 265717h6, puck xck3-10 |