5UBY
Fab structure of anti-HIV-1 gp120 mAb 1A8
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL14-1 |
Synchrotron site | SSRL |
Beamline | BL14-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-03-13 |
Detector | MARMOSAIC 325 mm CCD |
Wavelength(s) | 0.979460 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 140.098, 40.121, 77.195 |
Unit cell angles | 90.00, 104.89, 90.00 |
Refinement procedure
Resolution | 44.736 - 2.600 |
R-factor | 0.1907 |
Rwork | 0.188 |
R-free | 0.24860 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4fqq |
RMSD bond length | 0.009 |
RMSD bond angle | 1.124 |
Data reduction software | XDS |
Phasing software | PHENIX |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.740 | 2.760 |
High resolution limit [Å] | 2.600 | 2.600 |
Number of reflections | 24889 | |
<I/σ(I)> | 19.87 | 2.16 |
Completeness [%] | 99.7 | 100 |
Redundancy | 4.15 | 4.18 |
CC(1/2) | 0.999 | 0.736 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 291.15 | 18% (w/v) polyethylene glycol (PEG) 8000, 0.1 M HEPES pH 7.5 |