5U8H
DNA Polymerase Beta G231D crystallized in PEG 400
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RUH3R |
Temperature [K] | 104 |
Detector technology | IMAGE PLATE |
Collection date | 2012-12-10 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 54.085, 78.772, 54.686 |
Unit cell angles | 90.00, 104.45, 90.00 |
Refinement procedure
Resolution | 14.000 - 2.155 |
R-factor | 0.1872 |
Rwork | 0.182 |
R-free | 0.23380 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3isb |
RMSD bond length | 0.002 |
RMSD bond angle | 0.531 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER (2.3.0) |
Refinement software | PHENIX ((phenix.refine: 1.9_1692)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 14.000 | 14.000 | 2.230 |
High resolution limit [Å] | 2.150 | 4.580 | 2.150 |
Rmerge | 0.094 | 0.048 | 0.367 |
Rmeas | 0.103 | ||
Rpim | 0.040 | ||
Total number of observations | 139223 | ||
Number of reflections | 23423 | ||
<I/σ(I)> | 13.5 | ||
Completeness [%] | 97.6 | 100 | 80.3 |
Redundancy | 5.9 | 7.1 | 2.1 |
CC(1/2) | 0.999 | 0.805 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 291 | 22% PEG 400, 100 mM potassium sodium tartrate, 1% isopropanol |