5U3M
Crystal Structure of DH511.11P Fab in Complex with HIV-1 gp41 MPER Peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-02-27 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 1.0000 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 65.760, 102.110, 197.131 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.509 - 2.418 |
R-factor | 0.2306 |
Rwork | 0.227 |
R-free | 0.26980 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5u3l |
RMSD bond length | 0.002 |
RMSD bond angle | 0.500 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 39.509 | 50.000 | 2.480 |
High resolution limit [Å] | 2.410 | 5.520 | 2.410 |
Rmerge | 0.200 | 0.119 | 0.325 |
Number of reflections | 24106 | ||
<I/σ(I)> | 7.1 | ||
Completeness [%] | 93.6 | 99.6 | 69.4 |
Redundancy | 8.5 | 10.7 | 4.1 |
CC(1/2) | 0.993 | 0.845 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 293 | 4% Isopropanol, 3% PEG 3350, 0.75 M NH4SO4, 0.1 M C2H3NaO2 pH 4.5 |