5TKK
Structure of mouse vaccination-elicited HIV neutralizing antibody vFP5.01 in complex with HIV-1 fusion peptide residue 512-519
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-08-01 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 1 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 36.237, 82.233, 72.264 |
Unit cell angles | 90.00, 90.22, 90.00 |
Refinement procedure
Resolution | 25.469 - 1.550 |
R-factor | 0.2109 |
Rwork | 0.209 |
R-free | 0.24690 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.010 |
RMSD bond angle | 1.275 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 25.469 | 50.000 | 1.580 |
High resolution limit [Å] | 1.550 | 4.210 | 1.550 |
Rmerge | 0.066 | 0.038 | 0.468 |
Rmeas | 0.077 | ||
Rpim | 0.040 | ||
Total number of observations | 209617 | ||
Number of reflections | 59733 | ||
<I/σ(I)> | 13.1 | ||
Completeness [%] | 97.3 | 91.8 | 77.3 |
Redundancy | 3.5 | 3.5 | 2.1 |
CC(1/2) | 0.997 | 0.763 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 293 | 0.2M MgCl2, 0.1M Tris-HCl pH8.5, 20% PEG8000 |