5TGP
DNA 8mer containing two 2SeT modifications
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.1 |
Synchrotron site | ALS |
Beamline | 8.2.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-10-01 |
Detector | MAR CCD 130 mm |
Wavelength(s) | 0.98 |
Spacegroup name | P 61 |
Unit cell lengths | 44.861, 44.861, 41.736 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 38.850 - 1.600 |
R-factor | 0.18948 |
Rwork | 0.188 |
R-free | 0.20811 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1dns |
RMSD bond length | 0.026 |
RMSD bond angle | 3.505 |
Data reduction software | HKL-2000 (1.0) |
Data scaling software | HKL-2000 (1.0) |
Phasing software | PHASER (1.0) |
Refinement software | REFMAC (5.8.0069) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 38.850 | 1.660 |
High resolution limit [Å] | 1.600 | 1.600 |
Rmerge | 0.057 | 0.351 |
Number of reflections | 6189 | |
<I/σ(I)> | 30.9 | 2.13 |
Completeness [%] | 97.1 | 92.7 |
Redundancy | 6.5 | 2.6 |
CC(1/2) | 0.788 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 294 | 10% v/v (+/-)-2-Methyl-2,4-pentanediol, 0.040 M Sodium cacodylate trihydrate, 0.012 M Spermine tetrahydrochloride, 0.080 M Sodium chloride, 0.020 M Magnesium chloride hexahydrate |