5TDX
Resurrected Ancestral Hydroxynitrile Lyase from Flowering Plants
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2014-10-30 |
Detector | MAR scanner 300 mm plate |
Wavelength(s) | 1.0332 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 108.265, 108.265, 201.188 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.320 - 1.960 |
R-factor | 0.1792 |
Rwork | 0.177 |
R-free | 0.22650 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1yb6 |
RMSD bond length | 0.027 |
RMSD bond angle | 2.346 |
Data reduction software | XDS |
Data scaling software | Aimless (0.3.11) |
Phasing software | PHASER (2.5.1) |
Refinement software | REFMAC (5.8.0155) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.320 | 1.990 |
High resolution limit [Å] | 1.960 | 1.960 |
Rmerge | 0.097 | 0.680 |
Number of reflections | 86348 | |
<I/σ(I)> | 13.8 | |
Completeness [%] | 99.3 | 88.3 |
Redundancy | 8.5 | 5.8 |
CC(1/2) | 0.998 | 0.772 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.8 | 293 | 1:1 mix of protein (in 5mM BES buffer) with mother liquor (1.1 Molar Ammonium Citrate, 50 mM bis-tris propane, pH 6.8) Crystals formed after 2-3 weeks at 20 degrees C. Crystals were cryo-protected in 5% glycerol in mother liquor for 10 seconds then flash frozen in LN2. |