5T8H
Joint X-ray/neutron structure of HIV-1 protease triple mutant (V32I,I47V,V82I) with amprenavir at pH 6.0
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 293 |
Detector technology | IMAGE PLATE |
Collection date | 2016-03-03 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.54 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 59.234, 87.359, 46.565 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.760 - 2.200 |
Rwork | 0.217 |
R-free | 0.25500 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4jec |
RMSD bond length | 0.009 |
RMSD bond angle | 1.100 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | nCNS (1.0.0) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.000 | 2.320 | 1.920 |
High resolution limit [Å] | 1.850 | 2.200 | 1.850 |
Rmerge | 0.046 | 0.308 | 0.465 |
Number of reflections | 20505 | ||
<I/σ(I)> | 26.1 | 4 | 2.7 |
Completeness [%] | 95.9 | 54.5 | 93.8 |
Redundancy | 4 | 3.4 | 4.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 290 | 1M NaCl, 0.1 M NaMES | |
1 | VAPOR DIFFUSION, SITTING DROP | 290 | 1M NaCl, 0.1 M NaMES |