5T80
Crystal structure of 10E8 Fab in complex with the MPER epitope scaffold T117v2 and phosphatidic acid (06:0 PA)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 110 |
Detector technology | PIXEL |
Collection date | 2014-04-29 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97950 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 55.221, 67.262, 196.843 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.970 - 2.620 |
R-factor | 0.187 |
Rwork | 0.184 |
R-free | 0.24300 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4g6f 3lf6 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.087 |
Data reduction software | HKL-2000 (2.3.7) |
Data scaling software | HKL-2000 (2.3.7) |
Phasing software | PHASER (2.3.0) |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.968 | 2.690 |
High resolution limit [Å] | 2.624 | 2.620 |
Rmerge | 0.666 | |
Number of reflections | 21918 | |
<I/σ(I)> | 9.8 | 2.1 |
Completeness [%] | 97.5 | 96.7 |
Redundancy | 3.9 | 3.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 9.5 | 295.15 | 50% PEG 400, 0.2M NaCl, 0.1 M CHES pH 9.5 |