Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5SV2

Toxin VapC21 from Mycobacterium tuberculosis

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsLNLS BEAMLINE W01B-MX2
Synchrotron siteLNLS
BeamlineW01B-MX2
Temperature [K]100
Detector technologyPIXEL
Collection date2015-03-22
DetectorDECTRIS PILATUS 2M
Wavelength(s)1.2398
Spacegroup nameC 1 2 1
Unit cell lengths61.339, 44.351, 56.530
Unit cell angles90.00, 101.72, 90.00
Refinement procedure
Resolution30.030 - 1.310
R-factor0.1428
Rwork0.142
R-free0.15970
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3h87
RMSD bond length0.008
RMSD bond angle0.961
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX (1.10.1_2155)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]35.67835.6781.390
High resolution limit [Å]1.3103.9101.310
Rmerge0.0360.0290.384
Number of reflections67560
<I/σ(I)>22.453.32.5
Completeness [%]96.299.884
Redundancy8.3
CC(1/2)0.9990.9990.824
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION7.52930.1 M Hepes pH 7.5, 8% v/v ethylene glycol, 10% w/v polyethylene glycol 8,000

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon