5SSD

PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINCm4000007vvRA - (R,S) isomer

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	SSRL BEAMLINE BL12-1
Synchrotron site	SSRL
Beamline	BL12-1
Temperature [K]	100
Detector technology	PIXEL
Collection date	2022-02-20
Detector	DECTRIS EIGER X 16M
Wavelength(s)	0.88557
Spacegroup name	P 43
Unit cell lengths	88.732, 88.732, 39.434
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	39.680 - 1.150
R-factor	0.1391
Rwork	0.138
R-free	0.15800
Structure solution method	MOLECULAR REPLACEMENT
Data reduction software	XDS (Jan 10, 2022)
Data scaling software	XSCALE
Phasing software	PHASER (2.8.3)
Refinement software	PHENIX (1.20.1_4487)

Data quality characteristics

	Overall	Inner shell	Outer shell
Low resolution limit [Å]	39.680	39.680	1.220
High resolution limit [Å]	1.150	3.440	1.150
Rmerge	0.077	0.061	0.298
Rmeas	0.083	0.065	0.324
Total number of observations	720922
Number of reflections	108816	4213	17470
<I/σ(I)>	10.95	23.52	3
Completeness [%]	99.5	99	99.4
Redundancy	6.625	6.695	6.708
CC(1/2)	0.998	0.997	0.972

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, HANGING DROP	9.5	293	100 mM CHES, 28% PEG 3000