5SSD
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINCm4000007vvRA - (R,S) isomer
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-1 |
Synchrotron site | SSRL |
Beamline | BL12-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-02-20 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.88557 |
Spacegroup name | P 43 |
Unit cell lengths | 88.732, 88.732, 39.434 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.680 - 1.150 |
R-factor | 0.1391 |
Rwork | 0.138 |
R-free | 0.15800 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | XDS (Jan 10, 2022) |
Data scaling software | XSCALE |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 39.680 | 39.680 | 1.220 |
High resolution limit [Å] | 1.150 | 3.440 | 1.150 |
Rmerge | 0.077 | 0.061 | 0.298 |
Rmeas | 0.083 | 0.065 | 0.324 |
Total number of observations | 720922 | ||
Number of reflections | 108816 | 4213 | 17470 |
<I/σ(I)> | 10.95 | 23.52 | 3 |
Completeness [%] | 99.5 | 99 | 99.4 |
Redundancy | 6.625 | 6.695 | 6.708 |
CC(1/2) | 0.998 | 0.997 | 0.972 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 9.5 | 293 | 100 mM CHES, 28% PEG 3000 |