5SSB
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINCmk000007RhkC
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-1 |
Synchrotron site | SSRL |
Beamline | BL12-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-02-20 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.88557 |
Spacegroup name | P 43 |
Unit cell lengths | 88.660, 88.660, 39.569 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.650 - 1.150 |
R-factor | 0.1367 |
Rwork | 0.136 |
R-free | 0.15670 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | XDS (Jan 10, 2022) |
Data scaling software | XSCALE |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 39.650 | 39.650 | 1.220 |
High resolution limit [Å] | 1.150 | 3.440 | 1.150 |
Rmerge | 0.061 | 0.047 | 0.662 |
Rmeas | 0.066 | 0.051 | 0.720 |
Total number of observations | 730848 | ||
Number of reflections | 109432 | 4255 | 17546 |
<I/σ(I)> | 12.41 | 33.07 | 1.85 |
Completeness [%] | 99.8 | 99.8 | 99.6 |
Redundancy | 6.679 | 6.706 | 6.68 |
CC(1/2) | 0.999 | 0.998 | 0.891 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 9.5 | 293 | 100 mM CHES, 28% PEG 3000 |