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5SS3

PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINCnu000001eLaQ

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL12-1
Synchrotron siteSSRL
BeamlineBL12-1
Temperature [K]100
Detector technologyPIXEL
Collection date2022-02-20
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.88557
Spacegroup nameP 43
Unit cell lengths88.870, 88.870, 39.211
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution35.870 - 1.150
R-factor0.1565
Rwork0.155
R-free0.17960
Structure solution methodMOLECULAR REPLACEMENT
Data reduction softwareXDS (Jan 10, 2022)
Data scaling softwareXSCALE
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]35.87035.8701.220
High resolution limit [Å]1.1503.4501.150
Rmerge0.1010.0681.003
Rmeas0.1100.0741.089
Total number of observations719651
Number of reflections108401421517420
<I/σ(I)>7.6520.221.21
Completeness [%]99.999.999.8
Redundancy6.6396.7556.643
CC(1/2)0.9970.9960.862
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP9.5293100 mM CHES, 28% PEG 3000

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PDB entries from 2024-11-06

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