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5SS1

PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINCou000000a2Hm

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL12-1
Synchrotron siteSSRL
BeamlineBL12-1
Temperature [K]100
Detector technologyPIXEL
Collection date2022-02-20
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.88557
Spacegroup nameP 43
Unit cell lengths88.626, 88.626, 39.021
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution39.630 - 1.150
R-factor0.1627
Rwork0.161
R-free0.18710
Structure solution methodMOLECULAR REPLACEMENT
Data reduction softwareXDS (Jan 10, 2022)
Data scaling softwareXSCALE
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]39.63039.6301.220
High resolution limit [Å]1.1503.4401.150
Rmerge0.0860.0610.967
Rmeas0.0930.0661.050
Total number of observations713774
Number of reflections107713420817264
<I/σ(I)>7.9123.861.09
Completeness [%]99.999.999.6
Redundancy6.6276.626.622
CC(1/2)0.9980.9970.850
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP9.5293100 mM CHES, 28% PEG 3000

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PDB entries from 2024-07-10

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