5SRP
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with Z5340019182 - (R) isomer
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | ALS BEAMLINE 8.3.1 |
| Synchrotron site | ALS |
| Beamline | 8.3.1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2021-11-11 |
| Detector | DECTRIS PILATUS3 6M |
| Wavelength(s) | 0.88572 |
| Spacegroup name | P 43 |
| Unit cell lengths | 88.757, 88.757, 39.644 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 39.690 - 1.050 |
| R-factor | 0.1326 |
| Rwork | 0.132 |
| R-free | 0.15040 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Data reduction software | XDS (Jan 10, 2022) |
| Data scaling software | XSCALE |
| Phasing software | PHASER (2.8.3) |
| Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 39.690 | 39.690 | 1.120 |
| High resolution limit [Å] | 1.050 | 3.150 | 1.050 |
| Rmerge | 0.039 | 0.024 | 0.483 |
| Rmeas | 0.042 | 0.026 | 0.526 |
| Total number of observations | 927352 | ||
| Number of reflections | 142951 | 5540 | 22731 |
| <I/σ(I)> | 19.97 | 63.17 | 3.18 |
| Completeness [%] | 99.7 | 99.7 | 98.5 |
| Redundancy | 6.487 | 6.293 | 6.32 |
| CC(1/2) | 1.000 | 0.999 | 0.943 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 9.5 | 293 | 100 mM CHES, 28% PEG 3000 |






