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5SR1

PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with Z1272415642 - (R) isomer

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.3.1
Synchrotron siteALS
Beamline8.3.1
Temperature [K]100
Detector technologyPIXEL
Collection date2021-10-15
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.88556
Spacegroup nameP 43
Unit cell lengths88.617, 88.617, 39.517
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution39.630 - 1.050
R-factor0.1309
Rwork0.130
R-free0.14930
Structure solution methodMOLECULAR REPLACEMENT
Data reduction softwareXDS (Jan 10, 2022)
Data scaling softwareXSCALE
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]39.63039.6301.120
High resolution limit [Å]1.0503.1501.050
Rmerge0.0440.0300.362
Rmeas0.0490.0330.395
Total number of observations906549
Number of reflections142039549422700
<I/σ(I)>17.3746.853.42
Completeness [%]99.899.699.1
Redundancy6.3826.2386.292
CC(1/2)0.9990.9990.962
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP9.5293100 mM CHES, 28% PEG 3000

222415

PDB entries from 2024-07-10

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