5SQC
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with Z5010894388 - (R,R) and (S,S) isomers
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.3.1 |
Synchrotron site | ALS |
Beamline | 8.3.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-09-29 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.88557 |
Spacegroup name | P 43 |
Unit cell lengths | 88.718, 88.718, 39.454 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.360 - 1.050 |
R-factor | 0.1329 |
Rwork | 0.132 |
R-free | 0.15220 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | XDS (Jan 10, 2022) |
Data scaling software | XSCALE |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 44.360 | 44.360 | 1.120 |
High resolution limit [Å] | 1.050 | 3.150 | 1.050 |
Rmerge | 0.047 | 0.031 | 0.488 |
Rmeas | 0.051 | 0.034 | 0.534 |
Total number of observations | 919672 | ||
Number of reflections | 142396 | 5506 | 22868 |
<I/σ(I)> | 16.54 | 47.8 | 2.76 |
Completeness [%] | 99.8 | 99.6 | 99.6 |
Redundancy | 6.459 | 6.307 | 6.269 |
CC(1/2) | 0.999 | 0.999 | 0.929 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 9.5 | 293 | 100 mM CHES, 28% PEG 3000 |