5SD2
Crystal Structure of Dihydrofolate Reductase from Mycobacterium tuberculosis bound to NADP and SDDC Inhibitor SDDC-1236 (enantiomer)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-05-17 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97949 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 29.350, 67.340, 72.370 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.300 - 2.000 |
R-factor | 0.157 |
Rwork | 0.150 |
R-free | 0.22380 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (dev_3874) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.050 | |
High resolution limit [Å] | 2.000 | 8.940 | 2.000 |
Rmerge | 0.130 | 0.058 | 0.581 |
Rmeas | 0.146 | 0.067 | 0.657 |
Total number of observations | 48685 | ||
Number of reflections | 10101 | 133 | 736 |
<I/σ(I)> | 9.38 | 22.04 | 2.75 |
Completeness [%] | 98.8 | 92.4 | 99.3 |
CC(1/2) | 0.993 | 0.992 | 0.778 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289 | MCSGR1 B12 (291353b12): 100nN Tris:HCl pH8.5, 200mM MgCl2, 20% (w/v) PEG8000, 10mg/mL protein conc., cryo 15% ethylene glycol, puck pwp0-13 |