5SD1
Crystal Structure of Dihydrofolate Reductase from Mycobacterium tuberculosis bound to NADP and SDDC Inhibitor SDDC-1235 (enantiomer)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-05-17 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97949 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 29.450, 67.320, 72.290 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 36.150 - 2.000 |
R-factor | 0.1541 |
Rwork | 0.148 |
R-free | 0.21180 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (dev_3874) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.050 | |
High resolution limit [Å] | 2.000 | 8.940 | 2.000 |
Rmerge | 0.107 | 0.071 | 0.391 |
Rmeas | 0.118 | 0.081 | 0.456 |
Total number of observations | 54263 | ||
Number of reflections | 10105 | 142 | 649 |
<I/σ(I)> | 11.01 | 20.28 | 3.27 |
Completeness [%] | 98.6 | 98.6 | 87.2 |
CC(1/2) | 0.994 | 0.987 | 0.868 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289 | MCSG2 B6 (291345b6): 200mM sodium formate, 20% (w/v) PEG3350, 10mg/mL protein conc., cryo 15% ethylene glycol, puck pwp0-10 |