5SC7
CD44 PanDDA analysis group deposition -- The hyaluronan-binding domain of CD44 in complex with POB0120
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-07-15 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91808 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 31.209, 82.106, 32.401 |
Unit cell angles | 90.00, 118.26, 90.00 |
Refinement procedure
Resolution | 41.050 - 1.197 |
R-factor | 0.1586 |
Rwork | 0.157 |
R-free | 0.18170 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 2jcp |
RMSD bond length | 0.011 |
RMSD bond angle | 1.160 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | REFMAC |
Refinement software | BUSTER (2.10.4 (20-APR-2021)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 41.053 | 41.053 | 1.306 |
High resolution limit [Å] | 1.197 | 3.593 | 1.197 |
Rmeas | 0.064 | 0.033 | 0.466 |
Rpim | 0.035 | 0.017 | 0.316 |
Total number of observations | 105651 | 5901 | 2936 |
Number of reflections | 33804 | ||
<I/σ(I)> | 11.2 | 35.2 | 1.8 |
Completeness [%] | 85.2 | 99.2 | 32.2 |
Redundancy | 3.1 | 3.5 | 1.7 |
CC(1/2) | 0.999 | 0.999 | 0.771 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 200mM ammonium sulphate, 100mM MES, 24% PEG 5,000 MME |