5SC3
CD44 PanDDA analysis group deposition -- The hyaluronan-binding domain of CD44 in complex with Z422471910
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-07-14 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91808 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 30.890, 82.054, 32.255 |
Unit cell angles | 90.00, 117.64, 90.00 |
Refinement procedure
Resolution | 41.030 - 1.240 |
R-factor | 0.1484 |
Rwork | 0.147 |
R-free | 0.17200 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 2jcp |
RMSD bond length | 0.010 |
RMSD bond angle | 1.130 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | REFMAC |
Refinement software | BUSTER (2.10.4 (20-APR-2021)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 41.027 | 41.027 | 1.321 |
High resolution limit [Å] | 1.240 | 3.707 | 1.240 |
Rmeas | 0.072 | 0.052 | 0.483 |
Rpim | 0.038 | 0.028 | 0.275 |
Total number of observations | 103043 | 5376 | 4027 |
Number of reflections | 30430 | ||
<I/σ(I)> | 7.7 | 17 | 1.8 |
Completeness [%] | 80.7 | 98.5 | 29.7 |
Redundancy | 3.4 | 3.5 | 2.6 |
CC(1/2) | 0.998 | 0.997 | 0.801 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 200mM ammonium sulphate, 100mM MES, 24% PEG 5,000 MME |