5SBS
CD44 PanDDA analysis group deposition -- The hyaluronan-binding domain of CD44 in complex with Z340495298
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-05-01 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91808 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 30.999, 81.972, 32.279 |
Unit cell angles | 90.00, 117.86, 90.00 |
Refinement procedure
Resolution | 14.500 - 1.024 |
R-factor | 0.1785 |
Rwork | 0.178 |
R-free | 0.19440 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 2jcp |
RMSD bond length | 0.010 |
RMSD bond angle | 1.170 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | REFMAC |
Refinement software | BUSTER (2.10.4 (20-APR-2021)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 28.537 | 28.537 | 1.104 |
High resolution limit [Å] | 1.024 | 3.120 | 1.024 |
Rmeas | 0.085 | 0.048 | 0.639 |
Rpim | 0.053 | 0.029 | 0.451 |
Total number of observations | 102692 | 6106 | 3253 |
Number of reflections | 48255 | ||
<I/σ(I)> | 9.9 | 23.8 | 2.4 |
Completeness [%] | 78.5 | 93.7 | 28.4 |
Redundancy | 2.1 | 2.5 | 1.3 |
CC(1/2) | 0.996 | 0.995 | 0.629 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 200mM ammonium sulphate, 100mM MES, 24% PEG 5,000 MME |