5SBL
CD44 PanDDA analysis group deposition -- The hyaluronan-binding domain of CD44 in complex with Z126932614
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-03-06 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91199 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 30.668, 81.473, 31.911 |
Unit cell angles | 90.00, 117.75, 90.00 |
Refinement procedure
Resolution | 26.760 - 1.198 |
R-factor | 0.1673 |
Rwork | 0.166 |
R-free | 0.19490 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 2jcp |
RMSD bond length | 0.010 |
RMSD bond angle | 1.160 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | REFMAC |
Refinement software | BUSTER (2.10.4 (20-APR-2021)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 26.760 | 26.760 | 1.295 |
High resolution limit [Å] | 1.198 | 3.502 | 1.198 |
Rmeas | 0.068 | 0.040 | 0.471 |
Rpim | 0.038 | 0.022 | 0.324 |
Total number of observations | 94426 | 5184 | 3052 |
Number of reflections | 31724 | ||
<I/σ(I)> | 10.9 | 29.8 | 2 |
Completeness [%] | 80.7 | 89.5 | 24.8 |
Redundancy | 3 | 3.3 | 1.9 |
CC(1/2) | 0.998 | 0.998 | 0.796 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 200mM ammonium sulphate, 100mM MES, 24% PEG 5,000 MME |