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5SAV

DDR1, N-[2-[3-(2-aminopyrimidin-5-yl)oxyphenyl]ethyl]-3-(trifluoromethoxy)benzamide, 1.760A, P212121, Rfree=23.5%

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X10SA
Synchrotron siteSLS
BeamlineX10SA
Temperature [K]100
Detector technologyPIXEL
Collection date2013-12-12
DetectorPSI PILATUS 6M
Wavelength(s)1.00000
Spacegroup nameP 21 21 21
Unit cell lengths44.000, 62.560, 109.280
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution41.153 - 1.760
R-factor0.1947
Rwork0.193
R-free0.23460
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)inhouse model
RMSD bond length0.007
RMSD bond angle1.118
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (dev_1539)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]41.15041.1531.810
High resolution limit [Å]1.7607.8701.760
Rmerge0.2080.0422.028
Rmeas0.2300.0462.198
Total number of observations199573
Number of reflections307204122222
<I/σ(I)>6.7427.780.89
Completeness [%]99.998.6100
Redundancy6.555.5276.74
CC(1/2)0.9940.9980.288
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.52937.6 mg/mL protein in 20mM HEPES/NaOH pH7.5, 5mM DTT, 5% glycerol, 0.1M NaCl mixed with reservoir consisting of 0.1M MES/NaOH pH 6.5, 0.2M KI, 25% PEG 4000

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PDB entries from 2024-11-06

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