5S1U
PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 Nsp3 macrodomain in complex with EN300-52144
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-07-23 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91259 |
Spacegroup name | P 43 |
Unit cell lengths | 88.285, 88.285, 38.919 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 62.430 - 1.080 |
R-factor | 0.1669 |
Rwork | 0.165 |
R-free | 0.19670 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | None |
RMSD bond length | 0.010 |
RMSD bond angle | 1.080 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | REFMAC |
Refinement software | BUSTER (2.10.3 (20-MAY-2020)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 62.430 | 62.430 | 1.030 |
High resolution limit [Å] | 1.010 | 5.530 | 1.010 |
Rmerge | 0.089 | 0.049 | 1.376 |
Rmeas | 0.098 | 0.053 | 1.869 |
Rpim | 0.040 | 0.022 | 1.256 |
Total number of observations | 736945 | 6904 | 6755 |
Number of reflections | 150329 | ||
<I/σ(I)> | 5.2 | 18.2 | 0.2 |
Completeness [%] | 95.7 | 99.8 | 60.7 |
Redundancy | 4.9 | 6.6 | 1.4 |
CC(1/2) | 0.997 | 0.990 | 0.283 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 0.1 | 293.15 | 30% PEG 3K |