5RZC
EPB41L3 PanDDA analysis group deposition -- Crystal Structure of the FERM domain of human EPB41L3 in complex with Z300245038
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-08-02 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91589 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 38.470, 77.060, 99.560 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 60.940 - 1.750 |
R-factor | 0.2156 |
Rwork | 0.213 |
R-free | 0.26070 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 6ibe |
RMSD bond length | 0.009 |
RMSD bond angle | 1.419 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 60.940 | 60.940 | 1.800 |
High resolution limit [Å] | 1.750 | 7.830 | 1.750 |
Rmerge | 0.124 | 0.030 | 1.906 |
Rmeas | 0.135 | 0.033 | 2.092 |
Rpim | 0.053 | 0.014 | 0.852 |
Total number of observations | 197936 | 2334 | 13048 |
Number of reflections | 30665 | ||
<I/σ(I)> | 9.5 | 36.9 | 1 |
Completeness [%] | 99.9 | 99.8 | 100 |
Redundancy | 6.5 | 5.7 | 5.9 |
CC(1/2) | 0.998 | 0.999 | 0.497 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 298 | 0.075M ammonium nitrate, 0.1M MES pH 6.0, 6.5% PEG 2000, 6.5% PEG 3350, 6.5% PEG 4000, 6.5% PEG 5000, 10% ethylene glycol |