5RZB
EPB41L3 PanDDA analysis group deposition -- Crystal Structure of the FERM domain of human EPB41L3 in complex with Z271004858
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-08-02 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91589 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 38.550, 77.200, 99.590 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.840 - 1.590 |
R-factor | 0.2141 |
Rwork | 0.213 |
R-free | 0.24170 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 6ibe |
RMSD bond length | 0.009 |
RMSD bond angle | 1.603 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.790 | 49.790 | 1.630 |
High resolution limit [Å] | 1.590 | 7.110 | 1.590 |
Rmerge | 0.072 | 0.034 | 1.334 |
Rmeas | 0.078 | 0.037 | 1.490 |
Rpim | 0.031 | 0.016 | 0.657 |
Total number of observations | 251652 | 3013 | 15137 |
Number of reflections | 40868 | ||
<I/σ(I)> | 12.4 | 38.4 | 1.2 |
Completeness [%] | 99.9 | 99.7 | 99.8 |
Redundancy | 6.2 | 5.5 | 5.1 |
CC(1/2) | 0.999 | 0.997 | 0.512 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 298 | 0.075M ammonium nitrate, 0.1M MES pH 6.0, 6.5% PEG 2000, 6.5% PEG 3350, 6.5% PEG 4000, 6.5% PEG 5000, 10% ethylene glycol |