5RZ4
EPB41L3 PanDDA analysis group deposition -- Crystal Structure of the FERM domain of human EPB41L3 in complex with Z2856434909
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-07-12 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91587 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 38.420, 77.320, 99.700 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.930 - 1.610 |
R-factor | 0.2078 |
Rwork | 0.206 |
R-free | 0.23680 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 6ibe |
RMSD bond length | 0.009 |
RMSD bond angle | 1.544 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 77.320 | 77.320 | 1.650 |
High resolution limit [Å] | 1.610 | 7.200 | 1.610 |
Rmerge | 0.074 | 0.031 | 1.362 |
Rmeas | 0.080 | 0.034 | 1.521 |
Rpim | 0.032 | 0.014 | 0.666 |
Total number of observations | 244149 | 2924 | 14688 |
Number of reflections | 39338 | ||
<I/σ(I)> | 12.5 | 39.4 | 1.1 |
Completeness [%] | 99.9 | 99.6 | 99.9 |
Redundancy | 6.2 | 5.6 | 5.2 |
CC(1/2) | 0.999 | 0.999 | 0.466 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 298 | 0.075M ammonium nitrate, 0.1M MES pH 6.0, 6.5% PEG 2000, 6.5% PEG 3350, 6.5% PEG 4000, 6.5% PEG 5000, 10% ethylene glycol |