5RVD
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000263980802
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.3.1 |
Synchrotron site | ALS |
Beamline | 8.3.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-07-17 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.88557 |
Spacegroup name | P 43 |
Unit cell lengths | 88.629, 88.629, 39.243 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.640 - 1.000 |
R-factor | 0.1849 |
Rwork | 0.184 |
R-free | 0.19810 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | XDS (0.94) |
Data scaling software | XSCALE |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 39.640 | 39.640 | 1.060 |
High resolution limit [Å] | 1.000 | 2.990 | 1.000 |
Rmerge | 0.041 | 0.025 | 0.920 |
Rmeas | 0.045 | 0.027 | 1.010 |
Total number of observations | 1033194 | ||
Number of reflections | 162759 | 6341 | 24858 |
<I/σ(I)> | 16.14 | 55.34 | 1.46 |
Completeness [%] | 98.9 | 99.7 | 93.9 |
Redundancy | 6.348 | 6.357 | 5.843 |
CC(1/2) | 1.000 | 0.999 | 0.830 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 9.5 | 293 | 100 mM CHES, 28% PEG 3000 |