5RTH
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000000156863
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.3.1 |
Synchrotron site | ALS |
Beamline | 8.3.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-07-15 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.88557 |
Spacegroup name | P 43 |
Unit cell lengths | 88.755, 88.755, 39.501 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.380 - 1.000 |
R-factor | 0.1578 |
Rwork | 0.157 |
R-free | 0.17210 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | XDS (0.94) |
Data scaling software | XSCALE |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 44.380 | 44.380 | 1.060 |
High resolution limit [Å] | 1.000 | 3.000 | 1.000 |
Rmerge | 0.074 | 0.055 | 0.944 |
Rmeas | 0.080 | 0.060 | 1.040 |
Total number of observations | 1041988 | ||
Number of reflections | 164696 | 6409 | 25671 |
<I/σ(I)> | 9.32 | 26.2 | 1.04 |
Completeness [%] | 99.4 | 99.9 | 96.2 |
Redundancy | 6.327 | 6.268 | 5.642 |
CC(1/2) | 0.998 | 0.998 | 0.779 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 9.5 | 293 | 100 mM CHES, 28% PEG 3000 |