5RMF
PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 helicase in complex with Z54226006
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-07-31 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9126 |
Spacegroup name | P 1 |
Unit cell lengths | 59.190, 70.107, 85.386 |
Unit cell angles | 102.60, 96.01, 112.56 |
Refinement procedure
Resolution | 81.490 - 2.230 |
R-factor | 0.2107 |
Rwork | 0.207 |
R-free | 0.27040 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 6zsl |
RMSD bond length | 0.007 |
RMSD bond angle | 1.515 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 81.420 | 81.420 | 2.290 |
High resolution limit [Å] | 2.230 | 9.710 | 2.230 |
Rmerge | 0.121 | 0.039 | 1.446 |
Rmeas | 0.144 | 0.046 | 1.722 |
Rpim | 0.077 | 0.025 | 0.922 |
Total number of observations | 195495 | 2680 | 14875 |
Number of reflections | 57542 | ||
<I/σ(I)> | 6.2 | 24 | 1 |
Completeness [%] | 97.2 | 98.9 | 94.1 |
Redundancy | 3.4 | 3.8 | 3.4 |
CC(1/2) | 0.990 | 0.993 | 0.340 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 16 % Ethylene Glycol, 8 % PEG 8K, 0.05 M HEPES, 0.05 M MOPS, 0.03 M Sodium Nitrate, 0,03 M Sodium Phosphate, 0.03 M Ammonium Sulphate |