5RLT
PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 helicase in complex with Z53116498
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-07-29 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9126 |
Spacegroup name | P 1 |
Unit cell lengths | 59.012, 70.286, 85.452 |
Unit cell angles | 102.69, 96.40, 112.44 |
Refinement procedure
Resolution | 81.390 - 2.430 |
R-factor | 0.1567 |
Rwork | 0.151 |
R-free | 0.26350 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 6zsl |
RMSD bond length | 0.010 |
RMSD bond angle | 1.090 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | REFMAC |
Refinement software | BUSTER (2.10.3 (20-MAY-2020)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 81.360 | 81.360 | 2.520 |
High resolution limit [Å] | 2.430 | 9.090 | 2.430 |
Rmerge | 0.147 | 0.039 | 1.449 |
Rmeas | 0.176 | 0.046 | 1.757 |
Rpim | 0.095 | 0.024 | 0.973 |
Total number of observations | 152474 | 3208 | 15107 |
Number of reflections | 44483 | ||
<I/σ(I)> | 5.6 | 18.3 | 1.1 |
Completeness [%] | 97.6 | 98.7 | 95.5 |
Redundancy | 3.4 | 3.7 | 3.3 |
CC(1/2) | 0.984 | 0.998 | 0.495 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 16 % Ethylene Glycol, 8 % PEG 8K, 0.05 M HEPES, 0.05 M MOPS, 0.03 M Sodium Nitrate, 0,03 M Sodium Phosphate, 0.03 M Ammonium Sulphate |