5RGX
PanDDA analysis group deposition SARS-CoV-2 main protease fragment screen -- Crystal Structure of SARS-CoV-2 main protease in complex with Z1344037997 (Mpro-x2572)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2020-04-21 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.913 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 112.612, 52.920, 44.447 |
| Unit cell angles | 90.00, 102.76, 90.00 |
Refinement procedure
| Resolution | 33.720 - 1.690 |
| R-factor | 0.1842 |
| Rwork | 0.182 |
| R-free | 0.21810 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 6lu7 |
| RMSD bond length | 0.008 |
| RMSD bond angle | 0.960 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.7.4) |
| Phasing software | REFMAC |
| Refinement software | BUSTER (2.10.3 (29-NOV-2019)) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 33.730 | 33.730 | 1.720 |
| High resolution limit [Å] | 1.690 | 9.100 | 1.690 |
| Rmerge | 0.087 | 0.047 | 1.503 |
| Rmeas | 0.104 | 0.055 | 1.889 |
| Rpim | 0.057 | 0.028 | 1.125 |
| Total number of observations | 89173 | 681 | 3755 |
| Number of reflections | 28098 | ||
| <I/σ(I)> | 6 | 19 | 0.7 |
| Completeness [%] | 98.2 | 97.8 | 95 |
| Redundancy | 3.2 | 3.5 | 2.7 |
| CC(1/2) | 0.995 | 0.997 | 0.261 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293.15 | 15% PEG 4K, 5% DMSO, 0.1M MES pH 6.5 |
