5RFN
PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 main protease in complex with PCM-0102868
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2020-03-06 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.9126 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 112.250, 52.872, 44.476 |
| Unit cell angles | 90.00, 103.02, 90.00 |
Refinement procedure
| Resolution | 54.680 - 1.800 |
| R-factor | 0.1887 |
| Rwork | 0.186 |
| R-free | 0.23900 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 6lu7 |
| RMSD bond length | 0.008 |
| RMSD bond angle | 1.385 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.7.4) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 54.670 | 54.670 | 1.840 |
| High resolution limit [Å] | 1.800 | 9.000 | 1.800 |
| Rmerge | 0.172 | 0.053 | 1.544 |
| Rmeas | 0.201 | 0.061 | 1.826 |
| Rpim | 0.104 | 0.030 | 0.961 |
| Total number of observations | 86038 | 793 | 4821 |
| Number of reflections | 23659 | ||
| <I/σ(I)> | 4.3 | 16.3 | 0.7 |
| Completeness [%] | 99.9 | 99.7 | 99.4 |
| Redundancy | 3.6 | 3.8 | 3.4 |
| CC(1/2) | 0.990 | 0.995 | 0.333 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293.15 | 15% PEG 4K, 5% DMSO, 0.1M MES |
