5RF2
PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 main protease in complex with Z1741969146
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2020-03-06 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.9126 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 112.671, 52.715, 44.725 |
| Unit cell angles | 90.00, 102.96, 90.00 |
Refinement procedure
| Resolution | 54.900 - 1.530 |
| R-factor | 0.1837 |
| Rwork | 0.182 |
| R-free | 0.22160 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 6lu7 |
| RMSD bond length | 0.009 |
| RMSD bond angle | 1.511 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.7.4) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 54.880 | 54.880 | 1.560 |
| High resolution limit [Å] | 1.530 | 8.380 | 1.530 |
| Rmerge | 0.094 | 0.020 | 1.267 |
| Rmeas | 0.112 | 0.023 | 1.614 |
| Rpim | 0.060 | 0.012 | 0.983 |
| Total number of observations | 123482 | 959 | 4199 |
| Number of reflections | 38254 | ||
| <I/σ(I)> | 6.1 | 28.6 | 0.6 |
| Completeness [%] | 99.0 | 99.8 | 95.3 |
| Redundancy | 3.2 | 3.7 | 2.3 |
| CC(1/2) | 0.997 | 0.999 | 0.332 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293.15 | 15% PEG 4K, 5% DMSO, 0.1M MES |
