Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5RDY

PanDDA analysis group deposition -- Endothiapepsin ground state model 55

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsMAX IV BEAMLINE BioMAX
Synchrotron siteMAX IV
BeamlineBioMAX
Temperature [K]100
Detector technologyPIXEL
Collection date2019-03-30
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.827
Spacegroup nameP 1 21 1
Unit cell lengths45.370, 72.914, 52.754
Unit cell angles90.00, 109.15, 90.00
Refinement procedure
Resolution49.880 - 1.130
R-factor0.215
Rwork0.214
R-free0.21501
Structure solution methodFOURIER SYNTHESIS
RMSD bond length0.013
RMSD bond angle1.763
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareREFMAC (5.8.0238)
Refinement softwareREFMAC (5.8.0238)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]49.88050.0001.130
High resolution limit [Å]1.1303.2001.070
Rmerge0.1670.0571.187
Rmeas0.1850.0631.679
Total number of observations630213
Number of reflections1124095424431
<I/σ(I)>7.1331.37
Completeness [%]83.00.9920.019
Redundancy5.2865.360.02
CC(1/2)0.9970.997
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.62900.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000

237423

PDB entries from 2025-06-11

PDB statisticsPDBj update infoContact PDBjnumon