5RDU
PanDDA analysis group deposition -- Endothiapepsin ground state model 51
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-30 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.827 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.100, 73.180, 52.188 |
Unit cell angles | 90.00, 108.98, 90.00 |
Refinement procedure
Resolution | 49.400 - 1.050 |
R-factor | 0.2036 |
Rwork | 0.203 |
R-free | 0.20359 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.016 |
RMSD bond angle | 1.884 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | REFMAC (5.8.0238) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.400 | 50.000 | 1.120 |
High resolution limit [Å] | 1.050 | 3.160 | 1.050 |
Rmerge | 0.097 | 0.051 | 1.575 |
Rmeas | 0.105 | 0.055 | 1.719 |
Total number of observations | 964218 | ||
Number of reflections | 138840 | 5567 | 22745 |
<I/σ(I)> | 9.44 | 35.17 | 0.82 |
Completeness [%] | 99.1 | 0.991 | 0.956 |
Redundancy | 6.6 | 6.68 | 6.15 |
CC(1/2) | 0.998 | 0.997 | 0.404 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000 |