5RDJ
PanDDA analysis group deposition -- Endothiapepsin ground state model 43
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-30 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.827 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.300, 73.037, 52.400 |
Unit cell angles | 90.00, 109.26, 90.00 |
Refinement procedure
Resolution | 42.800 - 0.930 |
R-factor | 0.1513 |
Rwork | 0.151 |
R-free | 0.15128 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.018 |
RMSD bond angle | 1.956 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | REFMAC (5.8.0238) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.800 | 50.000 | 0.980 |
High resolution limit [Å] | 0.930 | 2.780 | 0.930 |
Rmerge | 0.041 | 0.028 | 1.309 |
Rmeas | 0.045 | 0.030 | 1.517 |
Total number of observations | 1233283 | ||
Number of reflections | 190783 | 7524 | 21948 |
<I/σ(I)> | 17.06 | 53.95 | 0.65 |
Completeness [%] | 92.5 | 0.912 | 0.626 |
Redundancy | 6.137 | 5.8 | 2.38 |
CC(1/2) | 0.999 | 0.999 | 0.319 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000 |