Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5RD5

PanDDA analysis group deposition -- Endothiapepsin ground state model 27

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsMAX IV BEAMLINE BioMAX
Synchrotron siteMAX IV
BeamlineBioMAX
Temperature [K]100
Detector technologyPIXEL
Collection date2019-03-30
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.827
Spacegroup nameP 1 21 1
Unit cell lengths45.410, 72.865, 52.626
Unit cell angles90.00, 109.25, 90.00
Refinement procedure
Resolution42.910 - 1.150
R-factor0.2385
Rwork0.238
R-free0.23848
Structure solution methodFOURIER SYNTHESIS
RMSD bond length0.013
RMSD bond angle1.878
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareREFMAC (5.8.0238)
Refinement softwareREFMAC (5.8.0238)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]42.91050.0001.160
High resolution limit [Å]1.1503.2601.090
Rmerge0.0850.031
Rmeas0.0930.035
Total number of observations654445
Number of reflections1018555079943
<I/σ(I)>11.1442.830
Completeness [%]80.90.9880.043
Redundancy6.0125.210.06
CC(1/2)0.9990.999
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.62900.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon