5RD4
PanDDA analysis group deposition -- Endothiapepsin ground state model 26
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-30 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.827 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.421, 72.722, 52.657 |
Unit cell angles | 90.00, 109.21, 90.00 |
Refinement procedure
Resolution | 42.930 - 1.180 |
R-factor | 0.186 |
Rwork | 0.185 |
R-free | 0.18599 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.013 |
RMSD bond angle | 1.827 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | REFMAC (5.8.0238) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.930 | 50.000 | 1.250 |
High resolution limit [Å] | 1.180 | 3.530 | 1.180 |
Rmerge | 0.095 | 0.040 | 1.578 |
Rmeas | 0.104 | 0.043 | 1.729 |
Total number of observations | 620269 | ||
Number of reflections | 91687 | 4026 | 8248 |
<I/σ(I)> | 11 | 39.36 | 1.05 |
Completeness [%] | 91.5 | 0.994 | 0.483 |
Redundancy | 6.411 | 6.05 | 2.77 |
CC(1/2) | 0.999 | 0.998 | 0.363 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000 |