5RD0
PanDDA analysis group deposition -- Endothiapepsin ground state model 22
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-30 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.827 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.164, 72.715, 52.254 |
Unit cell angles | 90.00, 109.07, 90.00 |
Refinement procedure
Resolution | 42.720 - 1.040 |
R-factor | 0.1528 |
Rwork | 0.152 |
R-free | 0.15283 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.019 |
RMSD bond angle | 1.960 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | REFMAC (5.8.0238) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.720 | 50.000 | 1.100 |
High resolution limit [Å] | 1.040 | 3.100 | 1.040 |
Rmerge | 0.060 | 0.034 | 1.750 |
Rmeas | 0.065 | 0.037 | 1.902 |
Total number of observations | 1000939 | ||
Number of reflections | 141665 | 5854 | 22765 |
<I/σ(I)> | 12.49 | 47.71 | 0.83 |
Completeness [%] | 96.6 | 0.992 | 0.913 |
Redundancy | 6.705 | 6.48 | 5.82 |
CC(1/2) | 0.999 | 0.999 | 0.410 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000 |