5RC3
PanDDA analysis group deposition -- Endothiapepsin changed state model for fragment F2X-Entry Library F03a
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-30 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.827 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.349, 72.941, 52.592 |
Unit cell angles | 90.00, 109.22, 90.00 |
Refinement procedure
Resolution | 42.860 - 0.980 |
R-factor | 0.1635 |
Rwork | 0.163 |
R-free | 0.16348 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.016 |
RMSD bond angle | 2.073 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | REFMAC (5.8.0238) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.860 | 50.000 | 1.040 |
High resolution limit [Å] | 0.980 | 2.930 | 0.980 |
Rmerge | 0.072 | 0.056 | 1.661 |
Rmeas | 0.078 | 0.060 | 1.872 |
Total number of observations | 1187655 | ||
Number of reflections | 172856 | 7012 | 26422 |
<I/σ(I)> | 11.28 | 35.15 | 0.74 |
Completeness [%] | 97.9 | 0.989 | 0.881 |
Redundancy | 6.523 | 6.79 | 4.15 |
CC(1/2) | 0.997 | 0.995 | 0.318 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000 |