5RBP
PanDDA analysis group deposition -- Endothiapepsin changed state model for fragment F2X-Entry Library B03a
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-30 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.827 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.198, 73.021, 52.565 |
Unit cell angles | 90.00, 109.20, 90.00 |
Refinement procedure
Resolution | 42.720 - 1.050 |
R-factor | 0.1624 |
Rwork | 0.162 |
R-free | 0.16241 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.015 |
RMSD bond angle | 1.843 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | REFMAC (5.8.0238) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.720 | 50.000 | 1.110 |
High resolution limit [Å] | 1.050 | 3.130 | 1.050 |
Rmerge | 0.074 | 0.044 | 1.681 |
Rmeas | 0.080 | 0.047 | 1.822 |
Total number of observations | 1016527 | ||
Number of reflections | 142392 | 5712 | 23491 |
<I/σ(I)> | 11.17 | 42.18 | 0.83 |
Completeness [%] | 99.3 | 0.989 | 0.965 |
Redundancy | 6.776 | 6.79 | 6.36 |
CC(1/2) | 0.999 | 0.998 | 0.453 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000 |