5RAN
PanDDA analysis group deposition -- Crystal Structure of JMJD1B in complex with XS039080d
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I02 |
| Synchrotron site | Diamond |
| Beamline | I02 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2015-09-30 |
| Detector | DECTRIS PILATUS 2M |
| Wavelength(s) | 0.92819 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 57.520, 93.750, 93.605 |
| Unit cell angles | 90.00, 108.18, 90.00 |
Refinement procedure
| Resolution | 88.930 - 1.950 |
| R-factor | 0.1849 |
| Rwork | 0.183 |
| R-free | 0.22480 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 6rbj |
| RMSD bond length | 0.008 |
| RMSD bond angle | 1.558 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.5.17) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 93.750 | 93.750 | 2.000 |
| High resolution limit [Å] | 1.950 | 8.720 | 1.950 |
| Rmerge | 0.078 | 0.032 | 1.173 |
| Rmeas | 0.093 | 0.038 | 1.386 |
| Rpim | 0.049 | 0.021 | 0.731 |
| Total number of observations | 234136 | 2751 | 17603 |
| Number of reflections | 68122 | ||
| <I/σ(I)> | 10.7 | 40.1 | 1.1 |
| Completeness [%] | 99.1 | 96.6 | 99.4 |
| Redundancy | 3.4 | 3.5 | 3.5 |
| CC(1/2) | 0.997 | 0.995 | 0.568 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 277 | 0.1M bis-tris pH 5.5 21% PEG3350 0.3M magnesium chloride |
