5RAC
PanDDA analysis group deposition -- Crystal Structure of JMJD1B in complex with FM001810a
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I02 |
Synchrotron site | Diamond |
Beamline | I02 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-09-30 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.92819 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 57.890, 93.950, 93.270 |
Unit cell angles | 90.00, 108.05, 90.00 |
Refinement procedure
Resolution | 47.540 - 1.730 |
R-factor | 0.1883 |
Rwork | 0.187 |
R-free | 0.22030 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 6rbj |
RMSD bond length | 0.008 |
RMSD bond angle | 1.570 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.17) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.490 | 47.490 | 1.770 |
High resolution limit [Å] | 1.730 | 7.740 | 1.730 |
Rmerge | 0.053 | 0.020 | 1.119 |
Rmeas | 0.063 | 0.024 | 1.354 |
Rpim | 0.034 | 0.013 | 0.751 |
Total number of observations | 336950 | 4099 | 22007 |
Number of reflections | 97929 | ||
<I/σ(I)> | 12.6 | 56 | 1 |
Completeness [%] | 99.1 | 98.8 | 98.2 |
Redundancy | 3.4 | 3.6 | 3.1 |
CC(1/2) | 0.999 | 0.999 | 0.544 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 277 | 0.1M bis-tris pH 5.5 21% PEG3350 0.3M magnesium chloride |