5RA3
PanDDA analysis group deposition Form1 MAP kinase p38-alpha -- Fragment N10836b in complex with MAP kinase p38-alpha
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-02-12 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.92819 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 46.006, 86.109, 127.911 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 71.430 - 1.570 |
R-factor | 0.2122 |
Rwork | 0.211 |
R-free | 0.22850 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 6so1 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.587 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.17) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 71.430 | 71.430 | 1.610 |
High resolution limit [Å] | 1.570 | 7.020 | 1.570 |
Rmerge | 0.075 | 0.032 | 1.285 |
Rmeas | 0.081 | 0.035 | 1.416 |
Rpim | 0.032 | 0.014 | 0.581 |
Total number of observations | 452476 | 5886 | 29621 |
Number of reflections | 71383 | ||
<I/σ(I)> | 10.3 | 33.8 | 1 |
Completeness [%] | 99.3 | 99.8 | 97.1 |
Redundancy | 6.3 | 6.3 | 5.8 |
CC(1/2) | 0.998 | 0.999 | 0.269 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.9 | 291 | 27.5% PEG3350, 0.1 M Bis-Tris propane, pH 6.9, 50 mM ammonium sulfate, 0.2 M 1:1 magnesium chloride:magnesium sulfate, 10% glycerol |