5R9J
PanDDA analysis group deposition Form1 MAP kinase p38-alpha -- Fragment N14231a in complex with MAP kinase p38-alpha
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-04-23 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 45.810, 86.270, 127.250 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 63.625 - 1.520 |
R-factor | 0.191 |
Rwork | 0.190 |
R-free | 0.20760 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 6so1 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.23) |
Phasing software | REFMAC |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 63.620 | 63.620 | 1.560 |
High resolution limit [Å] | 1.520 | 6.800 | 1.520 |
Rmerge | 0.051 | 0.025 | 1.343 |
Rmeas | 0.055 | 0.028 | 1.452 |
Rpim | 0.021 | 0.011 | 0.548 |
Total number of observations | 513618 | 6427 | 38932 |
Number of reflections | 78173 | ||
<I/σ(I)> | 16.3 | 50.7 | 1.4 |
Completeness [%] | 99.6 | 99.9 | 99.7 |
Redundancy | 6.6 | 6.3 | 6.8 |
CC(1/2) | 0.999 | 1.000 | 0.548 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.9 | 291 | 27.5% PEG3350, 0.1 M Bis-Tris propane, pH 6.9, 50 mM ammonium sulfate, 0.2 M 1:1 magnesium chloride:magnesium sulfate, 10% glycerol |