5R9F
PanDDA analysis group deposition Form1 MAP kinase p38-alpha -- Fragment N13724a in complex with MAP kinase p38-alpha
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-04-24 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 46.052, 85.712, 126.728 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.260 - 1.986 |
R-factor | 0.1767 |
Rwork | 0.176 |
R-free | 0.19860 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 6so1 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.23) |
Phasing software | REFMAC |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.260 | 29.260 | 2.040 |
High resolution limit [Å] | 1.990 | 8.880 | 1.990 |
Rmerge | 0.086 | 0.037 | 0.796 |
Rmeas | 0.094 | 0.041 | 0.865 |
Rpim | 0.037 | 0.017 | 0.334 |
Total number of observations | 228163 | 2643 | 15588 |
Number of reflections | 35226 | ||
<I/σ(I)> | 14 | 41 | 2 |
Completeness [%] | 99.3 | 97 | 94.8 |
Redundancy | 6.5 | 5.8 | 6.4 |
CC(1/2) | 0.998 | 0.999 | 0.762 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.9 | 291 | 27.5% PEG3350, 0.1 M Bis-Tris propane, pH 6.9, 50 mM ammonium sulfate, 0.2 M 1:1 magnesium chloride:magnesium sulfate, 10% glycerol |